UCSD Biochemical Genetics and Metabolomics Laboratory

A Program in the Division of Genetics, Department of Pediatrics, University of California San Diego

Metabolomics → Metabolomic Analysis → Panels → Full Targeted Metabolomics
Compounds (as of 11-November-2017):
 
Negative Ionization Positive Ionization Intracellular
#CompoundHMDB #CompoundHMDB #CompoundHMDB
1.2-decenedioic HMDB00603 1.(2/3)-amino(iso)butyric acid HMDB00452
HMDB00650
HMDB31654
HMDB03911 		1.3-phosphoglycerate HMDB00807
2.2-ethyl-3-hydroxypropionic HMDB00396 2.(3/5)-methylcytidine HMDB00982 2.6-phosphogluconate HMDB01316
3.2-hydroxy-3-methylvaleric HMDB00317 3.1,7-dimethylxanthine HMDB01860 3.acetyl-CoA HMDB01206
4.2-hydroxyadipic HMDB00321 4.1-alpha,25-dihydroxyvitamin D3 HMDB01903 4.adenosine HMDB00050
5.2-hydroxybutyric HMDB00008 5.1-methylhistidine HMDB00001 5.ADP HMDB01341
6.2-hydroxyglutaric HMDB00694 6.2-aminobutyric HMDB00452 6.AMP HMDB00045
7.2-hydroxyisocaproic HMDB00624 7.2-deoxyadenosine HMDB00101 7.ATP HMDB00538
8.2-hydroxyisovaleric HMDB00407 8.2-deoxycytidine HMDB00014 8.CDP HMDB01546
9.2-hydroxyphenylacetic HMDB00669 9.2-deoxyguanosine HMDB00085 9.CMP HMDB00095
10.2-hydroxysebacic HMDB00424 10.2-deoxyinosine HMDB00071 10.CTP HMDB00082
11.2-methylacetoacetic HMDB03771 11.2-deoxyuridine HMDB00012 11.cytidine HMDB00089
12.2-methylbutyrylglycine HMDB00339 12.2-methylbutyrylcarnitine HMDB00378 12.dihydroxyacetone phosphate/glyceraldehyde-3-phosphate HMDB01473
13.2-methylcitric HMDB00379 13.25-hydroxyvitamin D2 HMDB01438 13.erythrose-4- phosphate HMDB01321
14.2-octenedioic HMDB00341 14.25-hydroxyvitamin D3 HMDB03550 14.fructose 1,6-diphosphate HMDB01058
15.2-oxoadipic HMDB00225 15.3-methylhistidine HMDB00479 15.GDP HMDB01201
16.2-oxobutyric HMDB00005 16.4-aminobutyric HMDB00112 16.GMP HMDB01397
17.2-oxoglutaric HMDB00208 17.4-hydroxyproline HMDB00725 17.GTP HMDB01273
18.2-oxoisocaproic HMDB00695 18.4-pyridoxic_lactone HMDB03454 18.guanosine HMDB00133
19.2-oxoisovaleric HMDB00019 19.5-aminolevulinic HMDB01149 19.hexose (glu/fru/gal; can resolve on separate column/run for addition charge) HMDB00112
20.3-(3-MeO-4-OH)phenyllactic HMDB00913 20.5-Hydroxymethyluracil HMDB00469 20.hexose-6-phosphate HMDB01401
21.3-(3-OH-phenyl)-3-OH-propionic HMDB02643 21.5-hydroxypipecolic HMDB29426 21.NAD HMDB00902
22.3-hydroxy-2-methylbutyric HMDB00354 22.5-methylcytidine HMDB00982 22.NADH HMDB01487
23.3-hydroxy-3-methylglutaric HMDB00355 23.7,8-dihydrobiopterin HMDB00038 23.NADP HMDB00217
24.3-hydroxyadipic HMDB00345 24.7-methylguanine HMDB00897 24.NADPH HMDB00221
25.3-hydroxyadipic_lactone HMDB29171 25.7-methylguanosine HMDB01107 25.phosphoenolpyruvate HMDB00263
26.3-hydroxybutyric HMDB00011 26.acetylcarnitine HMDB00201 26.propionyl-CoA HMDB01275
27.3-hydroxydecanedioic HMDB00350 27.acetylcholine HMDB00895 27.ribose-5-phosphate HMDB01548
28.3-hydroxyglutaric HMDB00428 28.adenine HMDB00034 28.sedoheptulose-7- phosphate HMDB01068
29.3-hydroxyisobutyric HMDB00023 29.adenosine HMDB00050 29.succinyl-CoA HMDB01022
30.3-hydroxyisovaleric HMDB00754 30.adenylosuccinic HMDB00536 30.UDP HMDB00295
31.3-hydroxypropionic HMDB00700 31.AICAR HMDB01517 31.UMP HMDB00288
32.3-hydroxysuberic HMDB00325 32.AICAriboside HMDB62179 32.uridine HMDB00296
33.3-hydroxyvaleric HMDB00531 33.alanine HMDB00161
HMDB01310 		33.UTP HMDB00285
34.3-methyladipic HMDB00555 34.allo+delta-Hydroxylysine HMDB00450
35.3-methylcrotonylglycine HMDB00459 35.allopurinol HMDB14581
36.3-methylglutaconic HMDB00522 36.allopurinol-riboside HMDB00481
37.3-methylglutaric HMDB00752 37.alpha-amino-gamma-guanidinobutyric
38.4-hydroxybutyric HMDB00710 38.alpha-aminoadipic acid HMDB00510
39.4-hydroxycyclohexylacetic HMDB00451 39.alpha-aminobutyric HMDB00452
40.4-hydroxyhippuric HMDB60026 40.alpha-CEHC (carboxyethylhydroxychroman) HMDB01518
41.4-hydroxyisovaleric HMDB02011 41.alpha-tocopherol HMDB01893
42.4-hydroxyphenylacetic HMDB00020 42.alpha-tocopherol_acetate HMDB34227
43.4-hydroxyphenyllactic HMDB00755 43.aminoimidazolecarboximide (AICA) HMDB03192
44.4-hydroxyphenylpyruvic HMDB00707 44.anserine HMDB00194
45.4-pyridoxic HMDB03454 45.arabinose/ribose/xylose (aldopentoses) HMDB00646
HMDB29942
HMDB00283
HMDB00098
46.5-hydroxyhexanoic HMDB00525 46.arabitol/ribitol/xylitol (C5 sugar alcohols) HMDB00568
HMDB01851
HMDB00508
HMDB02917
47.5-Hydroxyindoleacetic HMDB00763 47.arginine HMDB00517
48.5-oxoproline HMDB00267 48.argininosuccinic HMDB00052
49.7-hydroxyoctanoic HMDB00486 49.asparagine HMDB00168
50.acetoacetic HMDB00060 50.aspartic acid HMDB06483
51.aconitic-Z HMDB00072 51.asym-dimethylarginine HMDB01539
52.adipic HMDB00448 52.beta-alanine HMDB00056
53.allantoin HMDB00462 53.betaine HMDB00043
54.ascorbic HMDB00044 54.biopterin HMDB00468
55.azelaic HMDB00784 55.biotin HMDB00030
56.benzoic HMDB01870 56.butyrylcarnitine HMDB02013
57.butyrylglycine HMDB00808 57.butyrylcholine HMDB13223
58.cinnamoylglycine-trans HMDB11621 58.cadaverine HMDB02322
59.citric HMDB00094 59.caffeine HMDB01847
60.dodecanedioic HMDB00623 60.canavanine HMDB02706
61.ethylmalonic HMDB00622 61.carnitine HMDB00062
62.fumaric HMDB00134 62.carnosine HMDB00033
63.furan-2,5-dicarboxylic HMDB04812 63.choline HMDB00097
64.glutaconic HMDB00620 64.citrulline HMDB00904
65.glutaric HMDB00661 65.creatine HMDB00064
66.glyceric HMDB00139 66.creatinine HMDB00562
67.glycochenodeoxycholic HMDB00637 67.cystathionine HMDB00099
68.glycocholic HMDB00138 68.cysteine HMDB00574
69.glycodeoxycholic HMDB00631 69.cysteinylglycine HMDB00078
70.glycolic HMDB00115 70.cystine HMDB00192
71.glyoxylic HMDB00119 71.cytidine HMDB00089
72.hexanoylglycine HMDB00701 72.cytosine HMDB00630
73.hexose HMDB00122 73.decanoylcarnitine HMDB00651
74.hippuric HMDB00714 74.delta-tocopherol HMDB02902
75.homogentisic HMDB01336 75.dihydroorotic HMDB03349
HMDB00528
76.homovanillic HMDB00118 76.dihydrothymine HMDB00079
77.indole-3-acetic HMDB00197 77.dihydrouracil HMDB00076
78.indole-3-aldehyde HMDB29737 78.dimethylglycine HMDB00092
79.indole-3-carboxylic HMDB03320 79.dopamine HMDB00073
80.indole-3-propionic HMDB02302 80.epinephrine HMDB00068
81.indole-3-pyruvic HMDB60484 81.folic HMDB00121
82.indolelactic HMDB00671 82.fucose (deoxyhexose) HMDB00174
HMDB29196
83.isobutyrylglycine HMDB00678 83.galactitol/mannitol/sorbitol (C6 sugar alcohols) HMDB00107
HMDB00765
HMDB00247
84.isocitric HMDB01874 84.gamma-aminobutyric acid HMDB00112
85.isovalerylglycine HMDB00678 85.gamma-butyrobetaine HMDB01161
86.kynurenic HMDB00715 86.gamma-CEHC HMDB01931
87.lactic HMDB00190 87.gamma-tocopherol HMDB01492
88.maleic HMDB00176 88.glucosamine HMDB01514
89.malic HMDB00156 89.glucosamine and galactosamine HMDB01514
90.malonic HMDB00691 90.glucose/ galactose/ mannose/ fructose (aldohexoses, and ketohexose (fructose)) HMDB00122
HMDB00516
HMDB00143
HMDB33704
HMDB00660
HMDB00660
91.methylmalonic HMDB00202 91.glucuronic acid (and lactone) HMDB00127
HMDB06355
92.methylsuccinic HMDB01844 92.glutamic acid HMDB00148
93.mevalonic HMDB00227 93.glutamine HMDB00641
94.mevalonolactone HMDB06024 94.glycine HMDB00123
95.N-acetyl-aspartic HMDB00812 95.glycylglycine HMDB11733
96.N-acetyl-tyrosine HMDB00866 96.glycylproline HMDB00721
97.orotic acid HMDB00226 97.guanidinoacetic HMDB00128
98.oxalic HMDB02329 98.guanine HMDB00132
99.pantothenic HMDB00210 99.guanosine HMDB00133
100.phenylacetic HMDB00209 100.hexanoylcarnitine HMDB00705
101.phenyllactic HMDB00563 101.histamine HMDB00870
102.phenylpyruvic HMDB00205 102.histidine HMDB00177
103.pimelic HMDB00857 103.homoarginine HMDB00670
104.propionylglycine HMDB00783 104.homocitrulline HMDB00679
105.pyruvic HMDB00243 105.homocysteine HMDB00742
106.quinolinic HMDB00232 106.homocystine HMDB00575
107.sebacic HMDB00792 107.hypoxanthine HMDB00157
108.suberic HMDB00893 108.indole-3-butyric HMDB02096
109.suberylglycine HMDB00953 109.inosine HMDB00195
110.succinic HMDB00254 110.isobutyrylcarnitine HMDB62606
111.succinic semialdehyde HMDB01259 111.isoleucine HMDB00172
HMDB33923
112.succinylacetone HMDB00635 112.isovalerylcarnitine HMDB00688
113.tetradecanedioic HMDB00872 113.isoxanthopterin HMDB00704
114.tiglylglycine HMDB00959 114.kynurenine HMDB00684
115.tridecanedioic HMDB02327 115.L-DOPA HMDB00181
116.undecanedioic HMDB00888 116.lauroylcarnitine HMDB02250
117.uracil HMDB00300 117.lauroylcholine HMDB02250
118.uric HMDB00289 118.leucine HMDB00687
119.urocanic HMDB00301 119.lysine HMDB00182
120.valerylglycine HMDB00927 120.maltitol (other [dihexose] C12 sugar alcohols (lactitol) HMDB02928
HMDB40937
121.vanillylmandelic HMDB00291 121.melatonin HMDB01389
122.methionine HMDB00696
123.MHPG (4-hydroxy-3-methoxyphenylglycol) HMDB01490
124.monapterin HMDB00727
125.myo-inositol (cyclic C6 sugar alcohol) HMDB00211
126.myristoylcarnitine HMDB05066
127.myristoylcholine
128.N-acetyl-neuraminic (incl. sialic acid, amino oligosaccharide) HMDB00230
129.N-acetylglucosamine/ N-acetylgalactosamine HMDB00803
HMDB00853
130.neopterin HMDB00845
131.niacin HMDB01488
132.norepinephrine HMDB00216
133.O-phosphoethanolamine HMDB00224
134.octanoylcarnitine HMDB00791
135.ornithine HMDB00214
136.oxipurinol HMDB00786
137.palmitoylcarnitine HMDB00222
138.paraxanthine HMDB01860
139.penicillamine HMDB14997
140.phenylalanine HMDB00159
141.pipecolic HMDB00070
142.proline HMDB00162
143.propionylcarnitine HMDB00824
144.propionylcholine HMDB13305
145.pseudouridine HMDB00767
146.pterin HMDB00802
147.putrescine HMDB01414
148.riboflavin HMDB00244
149.ribothymidine HMDB00884
150.ribulose (ketopentose) HMDB03371
HMDB00621
151.S-adenosylhomocysteine HMDB00939
152.S-adenosylmethionine HMDB01185
153.SAICAR HMDB00797
154.sarcosine HMDB00271
155.sepiapterin HMDB00238
156.serine HMDB00187
157.serotonin HMDB00259
158.spermidine HMDB01257
159.spermine HMDB01256
160.stearoylcarnitine HMDB00848
161.succinyladenosine HMDB00912
162.sucrose/alpha-lactose/maltose, (mixed pentose/hexose disaccharide and dihexose disaccharides) HMDB00258
HMDB00186
HMDB00163
163.sym-dimethylarginine HMDB03334
164.taurine HMDB00251
165.tetrahydrofolic HMDB01846
166.theobromine HMDB02825
167.theophylline HMDB01889
168.thiamine HMDB00235
169.threonine HMDB00167
170.thymidine HMDB00273
171.thymine HMDB00262
172.trimethyl-lysine HMDB01325
173.trimethylamine HMDB00906
174.trimethylamine-n-oxide HMDB00925
175.tryptamine HMDB00303
176.tryptophan HMDB00929
HMDB13609
177.tyramine HMDB00306
178.tyrosine HMDB00158
179.ureidopropionic HMDB00026
180.uridine HMDB00296
181.valerylcarnitine HMDB13128
182.valine HMDB00883
183.vitamin D3 sulfate
184.xanthine HMDB00292
185.xanthosine HMDB00299